MolNFT v2 · #188265 · protein
SARS-CoV-2 Spike RBD (dimer) in complex with two Fu2 nanobodies
7NLL: “SARS-CoV-2 Spike RBD (dimer) in complex with two Fu2 nanobodies”. Electron microscopy at 2.89, 1 ligand (NAG). MolNFT v2 #188265 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7NLL
- Type
- protein
- Length
- 656 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.89
- Source
- Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
- UniProt
- P0DTC2
- Ligands
- NAG
Structure
electron microscopy · resolution 2.89 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 196 | — | P0DTC2 |
| D | — | protein | 195 | — | P0DTC2 |
| A | — | protein | 133 | — | — |
| C | — | protein | 132 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7NLL · SARS-cov-2 spike rbd (dimer) in complex with two FU2 nanobodies · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7NLL · PDBe 7NLL · UniProt P0DTC2
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