MolNFT v2 · #187514 · protein
SARS-CoV-2 receptor binding domain bound to Fab WCSL 129
7MZI: “SARS-CoV-2 receptor binding domain bound to Fab WCSL 129”. X-ray diffraction at 1.85, 2 ligands (NAG, BMA). MolNFT v2 #187514 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7MZI
- Type
- protein
- Length
- 628 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.85
- Source
- Homo sapiens; Severe acute respiratory syndrome coronavirus 2
- UniProt
- P0DTC2
- Ligands
- NAG, BMA
Structure
x-ray diffraction · resolution 1.85 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | — | protein | 212 | — | — |
| H | — | protein | 220 | — | — |
| A | — | protein | 196 | — | P0DTC2 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- BMA · beta-D-mannopyranose · sugar
- GOL · Glycerol · additive · 14 copies · chains L, H, A
- PG4 · Tetraethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7MZI · SARS-cov-2 receptor binding domain bound to Fab wcsl 129 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7MZI · PDBe 7MZI · UniProt P0DTC2
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