MolNFT v2 · #186254 · protein
Mink Cluster 5-associated SARS-CoV-2 spike protein (S-GSAS-D614G-delFV) in the 2-RBD up conformation
7LWP: “Mink Cluster 5-associated SARS-CoV-2 spike protein (S-GSAS-D614G-delFV) in the 2-RBD up conformation”. Electron microscopy at 3.01, 1 ligand (NAG). MolNFT v2 #186254 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7LWP
- Type
- protein
- Length
- 2,982 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.01
- Source
- Severe acute respiratory syndrome coronavirus 2
- UniProt
- P0DTC2
- Ligands
- NAG
Structure
electron microscopy · resolution 3.01 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 995 | — | P0DTC2 |
| C | — | protein | 992 | — | P0DTC2 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 31 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LWP · Mink cluster 5-associated SARS-cov-2 spike protein (S-gsas-D614G- delfv) in the 2-rbd up… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7LWP · PDBe 7LWP · UniProt P0DTC2
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