MolNFT v2 · #182372 · protein
Crystal structure of SARS-CoV-2 main protease in complex with cpd-25
7GS2: “Crystal structure of SARS-CoV-2 main protease in complex with cpd-25”. X-ray diffraction at 1.77, 2 ligands (5F8, NA). MolNFT v2 #182372 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7GS2
- Type
- protein
- Length
- 610 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.77
- Source
- Severe acute respiratory syndrome coronavirus 2
- UniProt
- P0DTD1
- Ligands
- 5F8, NA
Structure
x-ray diffraction · resolution 1.77 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 304 | — | P0DTD1 |
| B | — | protein | 306 | — | P0DTD1 |
Ligands and binding sites
- 5F8 · 3-(pyridin-3-yl)benzoic acid · ligand · chains A
- NA · Sodium ion · metal · chains B
- DMS · Dimethyl sulfoxide · additive · 9 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 7GS2 · PDBe 7GS2 · UniProt P0DTD1
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