MolNFT v2 · #180259 · protein
Crystal structure of PDE4D catalytic domain complexed with compound 18a
7F2L: “Crystal structure of PDE4D catalytic domain complexed with compound 18a”. X-ray diffraction at 2.10111, 3 ligands (1AS, ZN, MG). MolNFT v2 #180259 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7F2L
- Type
- protein
- Length
- 640 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.10111
- Source
- Homo sapiens
- UniProt
- Q08499
- Ligands
- 1AS, ZN, MG
Structure
x-ray diffraction · resolution 2.10111 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 320 | — | Q08499 |
| B | — | protein | 320 | — | Q08499 |
Ligands and binding sites
- 1AS · (~{E})-4-[9-[(4-fluorophenyl)methoxy]-8-methoxy-2,2-dimethyl-7-(3-methylbut-2-enyl)-6-oxidanylidene-pyrano[3,2-b]xanthen-5-yl]oxybut-2-enoic acid · ligand · 2 copies · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7F2L · Crystal structure of PDE4D catalytic domain complexed with compound 18A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08499
- Elsewhere: RCSB PDB 7F2L · PDBe 7F2L · UniProt Q08499
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