MolNFT v2 · #180173 · protein
Cytochrome c-type biogenesis protein CcmABCD from E. coli
7F02: “Cytochrome c-type biogenesis protein CcmABCD from E. coli”. Electron microscopy at 3.24, 3 ligands (3PE, MG, PO4). MolNFT v2 #180173 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7F02
- Type
- protein
- Length
- 1,130 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.24
- Source
- Escherichia coli BL21(DE3)
- UniProt
- P33931, P0ABL8, P0ABM1, P0ABM5
- Ligands
- 3PE, MG, PO4
Structure
electron microscopy · resolution 3.24 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E | — | protein | 202 | — | P33931 |
| B, F | — | protein | 220 | — | P0ABL8 |
| C | — | protein | 231 | — | P0ABM1 |
| D | — | protein | 55 | — | P0ABM5 |
Ligands and binding sites
- 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine · ligand · chains B, C, D
- MG · Magnesium ion · metal · 2 copies · chains A, E
- PO4 · Phosphate ion · ion · 2 copies · chains A, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- P33931 · AlphaFold monomer V2.0 prediction for cytochrome C biogenesis ATP- binding export protein… · a predicted model of the same protein · chain A against A, TM-score 0.97
- P0ABL8 · AlphaFold monomer V2.0 prediction for heme exporter protein B (P0ABL8) · a predicted model of the same protein · chain F against A, TM-score 0.97
- P0ABM1 · AlphaFold monomer V2.0 prediction for heme exporter protein C (P0ABM1) · a predicted model of the same protein · chain C against A, TM-score 0.90
- P0ABM5 · AlphaFold monomer V2.0 prediction for heme exporter protein D (P0ABM5) · a predicted model of the same protein · chain D against A, TM-score 0.74
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P33931
- Every structure of UniProt P0ABL8
- Every structure of UniProt P0ABM1
- Every structure of UniProt P0ABM5
- Elsewhere: RCSB PDB 7F02 · PDBe 7F02 · UniProt P33931 · UniProt P0ABL8 · UniProt P0ABM1 · UniProt P0ABM5
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