MolNFT v2 · #180172 · protein

Structure of a triple-helix region of human collagen type XVII

7F01: “Structure of a triple-helix region of human collagen type XVII”. X-ray diffraction at 1.63, 1 ligand (SO4). MolNFT v2 #180172 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7F01
Type: protein
Length: 81 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.63
Molecule: collagen type XVII
Ligands: SO4

Structure

x-ray diffraction · resolution 1.63 · 1 distinct chain · 0% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	collagen type XVII	protein	27	0% helix, 0% strand	—

Ligands and binding sites

SO4 · Sulfate ion · ion · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

3 interfaces between chains.

A–B · 996 Å² buried · 12 hydrogen bonds · protein-protein
B–C · 943 Å² buried · 12 hydrogen bonds · protein-protein
A–C · 888 Å² buried · 13 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 15 modified (hydroxylation).

Compared structures

7F01 · Structure of a triple-helix region of human collagen type xvii · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7F01 · PDBe 7F01

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