MolNFT v2 · #179821 · RNA
Crystal structure of the Pepper aptamer in complex with HBC497
7EOL: “Crystal structure of the Pepper aptamer in complex with HBC497”. X-ray diffraction at 2.309, 2 ligands (J8O, MG). MolNFT v2 #179821 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7EOL
- Type
- RNA
- Length
- 49 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.309
- Source
- synthetic construct
- Ligands
- J8O, MG
Structure
x-ray diffraction · resolution 2.309 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | rna | 49 | — | — |
Ligands and binding sites
- J8O · 4-[(~{Z})-1-cyano-2-[5-[2-hydroxyethyl(methyl) amino]pyrazin-2-yl]ethenyl]benzenecarbonitrile · ligand · chains A
- MG · Magnesium ion · metal · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7EOL · Crystal structure of the pepper aptamer in complex with HBC497 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7EOL · PDBe 7EOL
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.