MolNFT v2 · #179685 · protein
Crystal structure of gibberellin 3-oxidase 2 (GA3ox2) in rice
7EKD: “Crystal structure of gibberellin 3-oxidase 2 (GA3ox2) in rice”. X-ray diffraction at 1.899, 3 ligands (AKG, J5X, PO4). MolNFT v2 #179685 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7EKD
- Type
- protein
- Length
- 343 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.899
- Source
- Oryza sativa subsp. japonica
- UniProt
- Q9FU53
- Ligands
- AKG, J5X, PO4
Structure
x-ray diffraction · resolution 1.899 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 343 | — | Q9FU53 |
Ligands and binding sites
- AKG · 2-oxoglutaric acid · ligand · chains A
- J5X · Gibberellin A9 · ligand · chains A
- PO4 · Phosphate ion · ion · 4 copies · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7EKD · Crystal structure of gibberellin 3-oxidase 2 (GA3OX2) in rice · the same entry in another collection · chain A against A, TM-score 1.00
- Q9FU53 · AlphaFold monomer V2.0 prediction for gibberellin 3-beta-dioxygenase 2 (Q9FU53) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9FU53
- Elsewhere: RCSB PDB 7EKD · PDBe 7EKD · UniProt Q9FU53
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