MolNFT v2 · #179390 · DNA
DNA containing Cu(II)-mediated 4-N-carboxymethylcytosine base pairs
7EAY: “DNA containing Cu(II)-mediated 4-N-carboxymethylcytosine base pairs”. X-ray diffraction at 2.5, 4 ligands (NCO, CU, K). MolNFT v2 #179390 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7EAY
- Type
- DNA
- Length
- 144 nucleotides
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.5
- Ligands
- NCO, CU, K, CO
Structure
x-ray diffraction · resolution 2.5 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L | — | dna | 12 | — | — |
Ligands and binding sites
- NCO · Cobalt hexammine(iii) · ligand · 17 copies · chains A, B, G, C, D, E, F, H, I, J, K, L
- CU · Copper (II) ion · metal · 12 copies · chains A, B, C, D, E, F, G, H, I, J, K, L
- K · Potassium ion · metal · 4 copies · chains A, C, E, G, H, I, K
- CO · Cobalt (II) ion · metal
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7EAY · DNA containing CU(II)-mediated 4-N-carboxymethylcytosine base pairs · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7EAY · PDBe 7EAY
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