MolNFT v2 · #174315 · protein

Crystal structure of yeast Sec62 cytoplasmic domain

6ZZZ: “Crystal structure of yeast Sec62 cytoplasmic domain”. X-ray diffraction at 2.54, 1 ligand (SO4). MolNFT v2 #174315 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6ZZZ
Type: protein
Length: 254 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.54
Source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
UniProt: P21825
Ligands: SO4

Structure

x-ray diffraction · resolution 2.54 · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	—	protein	127	—	P21825

Ligands and binding sites

SO4 · Sulfate ion · ion · 15 copies · chains A, B
GOL · Glycerol · additive · 2 copies · chains A
MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6ZZZ · Crystal structure of yeast SEC62 cytoplasmic domain · the same entry in another collection · chain A against A, TM-score 1.00
P21825 · AlphaFold monomer V2.0 prediction for translocation protein SEC62 (P21825) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P21825
Elsewhere: RCSB PDB 6ZZZ · PDBe 6ZZZ · UniProt P21825

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