MolNFT v2 · #173332 · protein
Variant Surface Glycoprotein VSGsur mutant H122A soaked in 7.7 mM suramin
6Z7E · Variant surface glycoprotein Sur: “Variant Surface Glycoprotein VSGsur mutant H122A soaked in 7.7 mM suramin”. X-ray diffraction at 1.663, 3 ligands (NAG, MAN, BMA). MolNFT v2 #173332 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6Z7E
- Type
- protein
- Length
- 356 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.663
- Source
- Trypanosoma brucei rhodesiense
- Molecule
- Variant surface glycoprotein Sur
- UniProt
- A0A291L8F4
- Ligands
- NAG, MAN, BMA
Structure
x-ray diffraction · resolution 1.663 · 1 distinct chain · 50% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Variant surface glycoprotein Sur | protein | 356 | 50% helix, 15% strand | A0A291L8F4 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- MAN · alpha-D-mannopyranose · sugar · 2 copies · chains A
- BMA · beta-D-mannopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 3 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 6Z7E · Variant surface glycoprotein vsgsur mutant H122A soaked in 7.7 mm suramin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A291L8F4
- Elsewhere: RCSB PDB 6Z7E · PDBe 6Z7E · UniProt A0A291L8F4
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