MolNFT v2 · #172622 · RNA
Crystal structure of the SAM-SAH riboswitch with adenosine.
6YMJ: “Crystal structure of the SAM-SAH riboswitch with adenosine.”. X-ray diffraction at 2.04, 2 ligands (NA, MG). MolNFT v2 #172622 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YMJ
- Type
- RNA
- Length
- 219 nucleotides
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.04
- Ligands
- NA, MG
Structure
x-ray diffraction · resolution 2.04 · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, F | — | rna | 28 | — | — |
| B, D, G, J, P | — | rna | 9 | — | — |
| C, O | — | rna | 27 | — | — |
| I, M | — | rna | 27 | — | — |
| N | — | rna | 10 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YMJ · Crystal structure of the SAM-sah riboswitch with adenosine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6YMJ · PDBe 6YMJ
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