MolNFT v2 · #172509 · protein + DNA
VcaM4I restriction endonuclease 5hmC-ssDNA complex
6YJB: “VcaM4I restriction endonuclease 5hmC-ssDNA complex”. X-ray diffraction at 1.55, 2 ligands (SO4, CL). MolNFT v2 #172509 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YJB
- Type
- protein + DNA
- Length
- 314 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.55
- Source
- synthetic construct; Vibrio campbellii
- UniProt
- A0A344KQF3
- Ligands
- SO4, CL
Structure
x-ray diffraction · resolution 1.55 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 309 | — | A0A344KQF3 |
| B | — | dna | 5 | — | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 11 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · 9 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YJB · VCAM4I restriction endonuclease 5HMC-ssdna complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A344KQF3
- Elsewhere: RCSB PDB 6YJB · PDBe 6YJB · UniProt A0A344KQF3
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