MolNFT v2 · #171711 · protein
Crystal structure of murine norovirus P domain in complex with Nanobody NB-5829 and glycochenodeoxycholate (GCDCA)
6XW7: “Crystal structure of murine norovirus P domain in complex with Nanobody NB-5829 and glycochenodeoxycholate…”. X-ray diffraction at 2.15, 2 ligands (CHO, MG). MolNFT v2 #171711 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6XW7
- Type
- protein
- Length
- 1,677 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.15
- Source
- Murine norovirus 1; Vicugna pacos
- UniProt
- Q80J94
- Ligands
- CHO, MG
Structure
x-ray diffraction · resolution 2.15 · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 303 | — | Q80J94 |
| B | — | protein | 305 | — | Q80J94 |
| E | — | protein | 303 | — | Q80J94 |
| F | — | protein | 301 | — | Q80J94 |
| C, D, G | — | protein | 117 | — | — |
| H | — | protein | 114 | — | — |
Ligands and binding sites
- CHO · Glycochenodeoxycholic acid · ligand · 4 copies · chains A, B, E, F
- MG · Magnesium ion · metal · chains B
- EDO · 1,2-ethanediol · additive · 8 copies · chains A, E, C, B, D, G, F, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XW7 · Crystal structure of murine norovirus P domain in complex with nanobody nb-5829 and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q80J94
- Elsewhere: RCSB PDB 6XW7 · PDBe 6XW7 · UniProt Q80J94
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