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MolNFT v2 · #171377 · protein

Crystal structure of iron-bound LSD4 from Sphingobium sp. strain SYK-6

6XMA: “Crystal structure of iron-bound LSD4 from Sphingobium sp. strain SYK-6”. X-ray diffraction at 1.45, 2 ligands (FE, SO4). MolNFT v2 #171377 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6XMA
Type
protein
Length
479 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.45
Source
Sphingobium sp. (strain NBRC 103272 / SYK-6)
UniProt
G2IQT9
Ligands
FE, SO4

Structure

x-ray diffraction · resolution 1.45 · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein479—G2IQT9

Ligands and binding sites

  • FE · Fe (III) ion · metal · chains A
  • SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6XMA · Crystal structure of iron-bound LSD4 from sphingobium sp. strain syk-6 · the same entry in another collection · chain A against A, TM-score 1.00

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