MolNFT v2 · #171146 · DNA
Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J21 immobile Holliday junction
6XFE: “Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J21 immobile Holliday junction”. X-ray diffraction at 3.12, 1 ligand (CAC). MolNFT v2 #171146 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6XFE
- Type
- DNA
- Length
- 42 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.12
- Ligands
- CAC
Structure
x-ray diffraction · resolution 3.12 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | dna | 11 | — | — |
| B | — | dna | 10 | — | — |
| C | — | dna | 5 | — | — |
| D | — | dna | 16 | — | — |
Ligands and binding sites
- CAC · Cacodylate ion · metal · 3 copies · chains C, B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XFE · Self-assembly of a 3D DNA crystal lattice (4X5 junction version) containing the J21… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6XFE · PDBe 6XFE
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