MolNFT v2 · #171074 · protein
Dengue serotype 3 RNA-dependent RNA polymerase bound to NITD-434
6XD0: “Dengue serotype 3 RNA-dependent RNA polymerase bound to NITD-434”. X-ray diffraction at 2.012, 2 ligands (V0M, ZN). MolNFT v2 #171074 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XD0
- Type
- protein
- Length
- 589 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.012
- Source
- Dengue virus 3
- UniProt
- A1XTB9
- Ligands
- V0M, ZN
Structure
x-ray diffraction · resolution 2.012 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 589 | — | A1XTB9 |
Ligands and binding sites
- V0M · 2-[({2-[(2,6-dichlorophenyl)amino]phenyl}acetyl)amino]-2,3-dihydro-1H-indene-2-carboxylic acid · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
- GOL · Glycerol · additive · 3 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XD0 · Dengue serotype 3 RNA-dependent RNA polymerase bound to nitd-434 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1XTB9
- Elsewhere: RCSB PDB 6XD0 · PDBe 6XD0 · UniProt A1XTB9
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