MolNFT v2 · #170839 · protein

IDO1 in complex with compound 4

6X5Y: “IDO1 in complex with compound 4”. X-ray diffraction at 2.65, 1 ligand (URJ). MolNFT v2 #170839 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6X5Y
Type: protein
Length: 746 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.65
Source: Homo sapiens
UniProt: P14902
Ligands: URJ

Structure

x-ray diffraction · resolution 2.65 · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	374	—	P14902
B	—	protein	372	—	P14902

Ligands and binding sites

URJ · 4-fluoro-N-{1-[5-(2-methylpyrimidin-4-yl)-5,6,7,8-tetrahydro-1,5-naphthyridin-2-yl]cyclopropyl}benzamide · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6X5Y · IDO1 in complex with compound 4 · the same entry in another collection · chain A against A, TM-score 1.00
P14902 · AlphaFold monomer V2.0 prediction for indoleamine 2,3-dioxygenase 1 (P14902) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P14902
Elsewhere: RCSB PDB 6X5Y · PDBe 6X5Y · UniProt P14902

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