MolNFT v2 · #168229 · protein

HLA-B*15:01 complexed with a synthetic peptide

6UZP: “HLA-B*15:01 complexed with a synthetic peptide”. X-ray diffraction at 2.08, 1 ligand (NA). MolNFT v2 #168229 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6UZP
Type: protein
Length: 385 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.08
Source: Homo sapiens; SYNTHETIC CONSTRUCT
UniProt: A0MSS3, P61769
Ligands: NA

Structure

x-ray diffraction · resolution 2.08 · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	276	—	A0MSS3
B	—	protein	100	—	P61769
C	—	protein	9	—	—

Ligands and binding sites

NA · Sodium ion · metal · chains B
EDO · 1,2-ethanediol · additive · 4 copies · chains A, C, B
ACT · Acetate ion · additive · 2 copies · chains A, B, C
GOL · Glycerol · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6UZP · HLA-B*15:01 complexed with a synthetic peptide · the same entry in another collection · chain A against A, TM-score 1.00
P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0MSS3
Every structure of UniProt P61769
Elsewhere: RCSB PDB 6UZP · PDBe 6UZP · UniProt A0MSS3 · UniProt P61769

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