MolNFT v2 · #168160 · protein
Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylserine
6UXN: “Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylserine”. X-ray diffraction at 2.49, 2 ligands (8SP, SO4). MolNFT v2 #168160 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6UXN
- Type
- protein
- Length
- 961 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.49
- Source
- Homo sapiens
- UniProt
- Q16611
- Ligands
- 8SP, SO4
Structure
x-ray diffraction · resolution 2.49 · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 83 | — | Q16611 |
| B, L | — | protein | 79 | — | Q16611 |
| C, K | — | protein | 81 | — | Q16611 |
| D | — | protein | 77 | — | Q16611 |
| E | — | protein | 79 | — | Q16611 |
| F | — | protein | 80 | — | Q16611 |
| G | — | protein | 80 | — | Q16611 |
| H | — | protein | 79 | — | Q16611 |
| I | — | protein | 82 | — | Q16611 |
| J | — | protein | 81 | — | Q16611 |
Ligands and binding sites
- 8SP · O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy) phosphoryl]-L-serine · ligand · 10 copies · chains A, B, E, C, D, F, G, H, I, J, K, L
- SO4 · Sulfate ion · ion · 19 copies · chains A, B, D, E, F, C, G, H, I, J, K, L
- GOL · Glycerol · additive · chains C, D, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6UXN · Crystal structure of bak core domain BH3-groove-dimer in complex with phosphatidylserine · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q16611
- Elsewhere: RCSB PDB 6UXN · PDBe 6UXN · UniProt Q16611
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