MolNFT v2 · #167711 · protein

Crystal structure of a lysozyme from Litopenaeus vannamei

6UKC: “Crystal structure of a lysozyme from Litopenaeus vannamei”. X-ray diffraction at 2.25, 1 pocket (best druggability 0.31). MolNFT v2 #167711 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6UKC
Type: protein
Length: 133 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.25
Source: Penaeus vannamei
Molecule: Lysozyme
EC: 3.2.1.17
UniProt: Q95V66
Pockets: 1 · best druggability 0.31

Structure

x-ray diffraction · resolution 2.25 · 1 distinct chain · 52% helix, 8% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lysozyme (EC 3.2.1.17)	protein	133	52% helix, 8% strand	Q95V66

Ligands and binding sites

GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	65	0.31	0.75	12	empty

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

6UKC · Crystal structure of a lysozyme from litopenaeus vannamei · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q95V66
Elsewhere: RCSB PDB 6UKC · PDBe 6UKC · UniProt Q95V66

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