Crystal structure of W200H UbiX in complex with a geranyl-FMN N5 adduct

Structure

x-ray diffraction · resolution 2.391 · 5 distinct chains.

Ligands and binding sites

• HZZ · [(2~{Z})-3,7-dimethylocta-2,6-dienyl] dihydrogen phosphate · ligand · 9 copies · chains A, E, J, B, C, H, G, K, L, D, F, I
• FMN · Flavin mononucleotide · ligand · 9 copies · chains A, L, B, I, D, H, E, F, K, C, J, G
• HJN · [(2~{R},3~{S},4~{S})-5-[5-[(2~{Z})-3,7-dimethylocta-2, 6-dienyl]-7,8-dimethyl-2,4-bis(oxidanylidene)-1~{H}-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate · ligand · 3 copies · chains C, D, I, F, G, E
• NA · Sodium ion · metal · 7 copies · chains B, E, C, H, D, F, G, K, I, J, L
• PO4 · Phosphate ion · ion · 3 copies · chains C, D, I, E, F, G
• ACT · Acetate ion · additive · 7 copies · chains B, C, F, G, H, I, J

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

• 6QLV · Crystal structure of W200H ubix in complex with a geranyl-FMN N5 adduct · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt A0A072ZCW8
• Elsewhere: RCSB PDB 6QLV · PDBe 6QLV · UniProt A0A072ZCW8