MolNFT v2 · #161320 · protein

EBOV GPdMuc (Makona) in complex with rEBOV-520 and rEBOV-548 Fabs

6PCI: “EBOV GPdMuc (Makona) in complex with rEBOV-520 and rEBOV-548 Fabs”. Electron microscopy at 4.12, 3 ligands (NAG, MAN, BMA). MolNFT v2 #161320 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6PCI
Type: protein
Length: 2,382 residues
Chains: 18
Method: electron microscopy
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 4.12
Source: Ebola virus; Homo sapiens; Zaire ebolavirus
UniProt: A0A1C4HDV6, A0A0F6PDW0
Ligands: NAG, MAN, BMA

Structure

electron microscopy · resolution 4.12 · 6 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	—	protein	225	—	A0A1C4HDV6
H, I, J	—	protein	132	—	—
K, L, M	—	protein	108	—	—
D, E, F	—	protein	97	—	A0A0F6PDW0
Q, R, S	—	protein	108	—	—
N, O, P	—	protein	124	—	—

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 18 copies · chains A, D, B, E, C, F, H, I, J
MAN · alpha-D-mannopyranose · sugar · 6 copies · chains A, B, C
BMA · beta-D-mannopyranose · sugar · 3 copies

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6PCI · Ebov gpdmuc (makona) in complex with rebov-520 and rebov-548 fabs · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1C4HDV6
Every structure of UniProt A0A0F6PDW0
Elsewhere: RCSB PDB 6PCI · PDBe 6PCI · UniProt A0A1C4HDV6 · UniProt A0A0F6PDW0

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