MolNFT v2 · #160035 · protein + RNA

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

6O8X: “Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02”. Electron microscopy at 3.68, 1 ligand (ZN). MolNFT v2 #160035 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6O8X
Type: protein + RNA
Length: 9,746 residues
Chains: 49
Method: electron microscopy
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 3.68
Source: Enterococcus faecalis
UniProt: A0A1B4XKR8, A0A1B4XRV7, A0A1B4XKW0, A0A1B4XKB6, A0A1B4XKQ3, A0A1B4XKS6, A0A1B4XSA2, A0A1B4XKR5, A0A1B4XKV1, A0A1B4XKQ7, A0A1B4XKT7, A0A1B4XKT0, A0A1B4XRW3, A0A1B4XP69, A0A1B4XKS3, A0A1B4XKB3, A0A1B4XKS0, A0A1B4XQJ7, A0A1B4XKR6, A0A1B4XKR3, A0A1B4XKU7, A0A1B4XKS2, A0A1B4XKU3, A0A1B4XSB2, A0A1B4XKS1, A0A1B4XKT1, A0A1B4XKU1, A0A1B4XKX1, A0A1B4XKS7, A0A1B4XPL8, A0A1B4XM76, A0A1B4XMC1, A0A1B4XKT6, A0A1B4XKR7, A0A1B4XKV5, A0A1X3AL36, A0A1B4XMB1, A0A1B4XRZ8, A0A1B4XKV0, A0A1B4XKW1, A0A1B4XMV6, A0A1B4XMM2, A0A1B4XR98, A0A1B4XSI4, A0A1B4XM73, A0A1B4XKT9
Ligands: ZN

Structure

electron microscopy · resolution 3.68 · 49 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
a	—	rna	1528	—	—
c	—	protein	204	—	A0A1B4XKR8
d	—	protein	201	—	A0A1B4XRV7
e	—	protein	163	—	A0A1B4XKW0
f	—	protein	97	—	A0A1B4XKB6
g	—	protein	154	—	A0A1B4XKQ3
h	—	protein	131	—	A0A1B4XKS6
i	—	protein	128	—	A0A1B4XSA2
j	—	protein	99	—	A0A1B4XKR5
k	—	protein	117	—	A0A1B4XKV1
l	—	protein	136	—	A0A1B4XKQ7
m	—	protein	112	—	A0A1B4XKT7
n	—	protein	60	—	A0A1B4XKT0
o	—	protein	88	—	A0A1B4XRW3
p	—	protein	89	—	A0A1B4XP69
q	—	protein	83	—	A0A1B4XKS3
r	—	protein	66	—	A0A1B4XKB3
s	—	protein	78	—	A0A1B4XKS0
t	—	protein	81	—	A0A1B4XQJ7
A	—	rna	2897	—	—
B	—	rna	116	—	—
C	—	protein	275	—	A0A1B4XKR6
D	—	protein	207	—	A0A1B4XKR3
E	—	protein	206	—	A0A1B4XKU7
F	—	protein	176	—	A0A1B4XKS2
G	—	protein	176	—	A0A1B4XKU3
K	—	protein	145	—	A0A1B4XSB2
L	—	protein	122	—	A0A1B4XKS1
M	—	protein	146	—	A0A1B4XKT1
N	—	protein	141	—	A0A1B4XKU1
O	—	protein	123	—	A0A1B4XKX1
P	—	protein	117	—	A0A1B4XKS7
Q	—	protein	114	—	A0A1B4XPL8
R	—	protein	114	—	A0A1B4XM76
S	—	protein	102	—	A0A1B4XMC1
T	—	protein	112	—	A0A1B4XKT6
U	—	protein	88	—	A0A1B4XKR7
V	—	protein	101	—	A0A1B4XKV5
W	—	protein	94	—	A0A1X3AL36
X	—	protein	76	—	A0A1B4XMB1
Y	—	protein	54	—	A0A1B4XRZ8
Z	—	protein	61	—	A0A1B4XKV0
0	—	protein	58	—	A0A1B4XKW1
1	—	protein	60	—	A0A1B4XMV6
2	—	protein	56	—	A0A1B4XMM2
3	—	protein	49	—	A0A1B4XR98
4	—	protein	43	—	A0A1B4XSI4
5	—	protein	64	—	A0A1B4XM73
6	—	protein	38	—	A0A1B4XKT9

Ligands and binding sites

ZN · Zinc ion · metal · 4 copies · chains n, 2, 3, 6

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

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