MolNFT v2 · #159994 · protein
Nitrogenase MoFeP mutant S188A from Azotobacter vinelandii in the indigo carmine oxidized state
6O7S: “Nitrogenase MoFeP mutant S188A from Azotobacter vinelandii in the indigo carmine oxidized state”. X-ray diffraction at 2.27, 5 ligands (HCA, ICS, LPJ). MolNFT v2 #159994 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6O7S
- Type
- protein
- Length
- 1,996 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.27
- Source
- Azotobacter vinelandii
- UniProt
- P07328, P07329
- Ligands
- HCA, ICS, LPJ, NA, FE
Structure
x-ray diffraction · resolution 2.27 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 476 | — | P07328 |
| B, D | — | protein | 522 | — | P07329 |
| C | — | protein | 476 | — | P07328 |
Ligands and binding sites
- HCA · 3-hydroxy-3-carboxy-adipic acid · ligand · 2 copies · chains A, C
- ICS · iron-sulfur-molybdenum cluster with interstitial carbon · ligand · 2 copies · chains A, C
- LPJ · FE(6)-S(7) cluster · ligand · 2 copies · chains A, B, C, D
- NA · Sodium ion · metal · 2 copies · chains A, C
- FE · Fe (III) ion · metal · 2 copies · chains B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6O7S · Nitrogenase mofep mutant S188A from azotobacter vinelandii in the indigo carmine oxidized… · the same entry in another collection · chain A against A, TM-score 1.00
- P07328 · AlphaFold monomer V2.0 prediction for nitrogenase molybdenum-iron protein alpha chain… · a predicted model of the same protein · chain C against A, TM-score 1.00
- P07329 · AlphaFold monomer V2.0 prediction for nitrogenase molybdenum-iron protein beta chain… · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07328
- Every structure of UniProt P07329
- Elsewhere: RCSB PDB 6O7S · PDBe 6O7S · UniProt P07328 · UniProt P07329
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