MolNFT v2 · #159959 · protein
Structure of the TRPM8 cold receptor by single particle electron cryo-microscopy, AMTB-bound state
6O6R: “Structure of the TRPM8 cold receptor by single particle electron cryo-microscopy, AMTB-bound state”. Electron microscopy at 3.2, 4 ligands (Y01, 9PE, LQ7). MolNFT v2 #159959 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6O6R
- Type
- protein
- Length
- 3,332 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.2
- Source
- Parus major
- Ligands
- Y01, 9PE, LQ7, NA
Structure
electron microscopy · resolution 3.2 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 833 | — | — |
Ligands and binding sites
- Y01 · Cholesterol hemisuccinate · ligand · 4 copies · chains A, B, C, D
- 9PE · (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate · ligand · 4 copies · chains A, D, B, C
- LQ7 · N-(3-aminopropyl)-2-[(3-methylphenyl)methoxy]-N-[(thiophen-2-yl)methyl]benzamide · ligand · 4 copies · chains A, B, C, D
- NA · Sodium ion · metal · 8 copies · chains A, B, C, D
- UND · Undecane · additive · 8 copies · chains A, D, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6O6R · Structure of the TRPM8 cold receptor by single particle electron cryo- microscopy… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6O6R · PDBe 6O6R
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