MolNFT v2 · #159912 · protein
Crystal structure of the Vitronectin hemopexin-like domain
6O5E: “Crystal structure of the Vitronectin hemopexin-like domain”. X-ray diffraction at 1.9, 4 ligands (NA, SO4, CL). MolNFT v2 #159912 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6O5E
- Type
- protein
- Length
- 366 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.9
- Source
- Homo sapiens
- UniProt
- P04004
- Ligands
- NA, SO4, CL, NO3
Structure
x-ray diffraction · resolution 1.9 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 189 | — | P04004 |
| B | — | protein | 177 | — | P04004 |
Ligands and binding sites
- NA · Sodium ion · metal · 4 copies · chains A, B
- SO4 · Sulfate ion · ion · 3 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains A, B
- NO3 · Nitrate ion · ion · chains A, B
- IMD · Imidazole · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6O5E · Crystal structure of the vitronectin hemopexin-like domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04004
- Elsewhere: RCSB PDB 6O5E · PDBe 6O5E · UniProt P04004
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