MolNFT v2 · #159853 · protein
Crystal structure of the Fab fragment of the human HIV-1 neutralizing antibody PGZL1.H4K3 in complex with its MPER peptide epitope (region 671-683 of HIV-1 gp41).
6O3L: “Crystal structure of the Fab fragment of the human HIV-1 neutralizing antibody PGZL1.H4K3 in complex with its…”. X-ray diffraction at 1.98, 1 ligand (PO4). MolNFT v2 #159853 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6O3L
- Type
- protein
- Length
- 905 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.98
- Source
- Homo sapiens; SYNTHETIC CONSTRUCT
- Ligands
- PO4
Structure
x-ray diffraction · resolution 1.98 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L, B | — | protein | 214 | — | — |
| H | — | protein | 223 | — | — |
| A | — | protein | 222 | — | — |
| D, E | — | protein | 16 | — | — |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 6 copies · chains H, L, B, A
- GOL · Glycerol · additive · 5 copies · chains L, H, A, B, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6O3L · Crystal structure of the Fab fragment of the human HIV-1 neutralizing antibody PGZL1.H4K3… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6O3L · PDBe 6O3L
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