MolNFT v2 · #15977 · protein
NMR Solution Structure of Zinc-binding protein 3-methyladenine DNA glycosylase I (TAG)
1NKU: “NMR Solution Structure of Zinc-binding protein 3-methyladenine DNA glycosylase I (TAG)”. Solution nmr at NOT, 1 ligand (ZN), 3 pockets (best druggability 0.46). MolNFT v2 #15977 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 1NKU
- Type
- protein
- Length
- 187 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- NOT
- Source
- Escherichia coli
- Molecule
- 3-Methyladenine Dna Glycosylase I (TAG)
- EC
- 3.2.2.20
- UniProt
- P05100
- Ligands
- ZN
- Pockets
- 3 · best druggability 0.46
Structure
solution nmr · resolution NOT · 1 distinct chain · 57% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3-Methyladenine Dna Glycosylase I (TAG) (EC 3.2.2.20) | protein | 187 | 57% helix, 2% strand | P05100 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 125 | 0.46 | 0.78 | 21 | empty |
| 2 | 98 | 0.34 | 0.72 | 14 | empty |
| 3 | 50 | 0.33 | 0.78 | 15 | empty |
Compared structures
- 1NKU · NMR solution structure of zinc-binding protein 3-methyladenine DNA glycosylase I (tag) · the same entry in another collection · chain A against A, TM-score 1.00
- P05100 · AlphaFold monomer V2.0 prediction for DNA-3-methyladenine glycosylase 1 (P05100) · a predicted model of the same protein · chain A against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05100
- Elsewhere: RCSB PDB 1NKU · PDBe 1NKU · UniProt P05100
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