MolNFT v2 · #159460 · protein

Crystal Structure of the Alpha-ribazole Phosphatase from Shigella flexneri

6NRU: “Crystal Structure of the Alpha-ribazole Phosphatase from Shigella flexneri”. X-ray diffraction at 2.505, 2 ligands (SO4, CL). MolNFT v2 #159460 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6NRU
Type: protein
Length: 2,425 residues
Chains: 12
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.505
Source: Shigella flexneri 2a
UniProt: A0A2Y2SF70
Ligands: SO4, CL

Structure

x-ray diffraction · resolution 2.505 · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, J	—	protein	202	—	A0A2Y2SF70
I, K	—	protein	203	—	A0A2Y2SF70
L	—	protein	201	—	A0A2Y2SF70

Ligands and binding sites

SO4 · Sulfate ion · ion · 24 copies · chains A, B, C, D, E, F, G, H, I, J, K, L
CL · Chloride ion · ion · 6 copies · chains D, F, I, J, K, L
PEG · Di(hydroxyethyl)ether · additive · 9 copies · chains A, E, F, G, H, L
EDO · 1,2-ethanediol · additive · 6 copies · chains A, F, H, I, J
GOL · Glycerol · additive · 4 copies · chains C, G, I
PG4 · Tetraethylene glycol · additive · 2 copies · chains A, B, C, J

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6NRU · Crystal structure of the alpha-ribazole phosphatase from shigella flexneri · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2Y2SF70
Elsewhere: RCSB PDB 6NRU · PDBe 6NRU · UniProt A0A2Y2SF70

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