MolNFT v2 · #159106 · protein
Rhodobacter sphaeroides bc1 with azoxystrobin
6NHH: “Rhodobacter sphaeroides bc1 with azoxystrobin”. X-ray diffraction at 3, 6 ligands (HEM, AZO, 6PE). MolNFT v2 #159106 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6NHH
- Type
- protein
- Length
- 1,724 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3
- Source
- Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
- UniProt
- A0A344Q9J3, A0A344Q9J2, A0A344Q9J4
- Ligands
- HEM, AZO, 6PE, HEC, FES, SR
Structure
x-ray diffraction · resolution 3 · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 431 | — | A0A344Q9J3 |
| B | — | protein | 256 | — | A0A344Q9J2 |
| C, G | — | protein | 175 | — | A0A344Q9J4 |
| E | — | protein | 430 | — | A0A344Q9J3 |
| F | — | protein | 257 | — | A0A344Q9J2 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 4 copies · chains A, E
- AZO · Methyl (2Z)-2-(2-{[6-(2-cyanophenoxy)pyrimidin-4-yl]oxy}phenyl)-3-methoxyacrylate · ligand · 2 copies · chains A, E
- 6PE · 1,2-dihexanoyl-sn-glycero-3-phosphoethanolamine · ligand · 2 copies · chains A, E
- HEC · Heme C · ligand · 2 copies · chains B, F
- FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains C, G
- SR · Strontium ion · metal · 3 copies · chains B, F
- BOG · octyl beta-D-glucopyranoside · additive · 2 copies · chains A, B, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6NHH · Rhodobacter sphaeroides BC1 with azoxystrobin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A344Q9J3
- Every structure of UniProt A0A344Q9J2
- Every structure of UniProt A0A344Q9J4
- Elsewhere: RCSB PDB 6NHH · PDBe 6NHH · UniProt A0A344Q9J3 · UniProt A0A344Q9J2 · UniProt A0A344Q9J4
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