MolNFT v2 · #158727 · protein

rat hPGDS complexed with a quinoline

6N69: “rat hPGDS complexed with a quinoline”. X-ray diffraction at 2, 2 ligands (GSH, KDV). MolNFT v2 #158727 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6N69
Type: protein
Length: 397 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2
Source: Rattus norvegicus
UniProt: O35543
Ligands: GSH, KDV

Structure

x-ray diffraction · resolution 2 · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	198	—	O35543
B	—	protein	199	—	O35543

Ligands and binding sites

GSH · Glutathione · ligand · 2 copies · chains A, B
KDV · quinoline-3-carbonitrile · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6N69 · Rat hpgds complexed with a quinoline · the same entry in another collection · chain A against A, TM-score 1.00
O35543 · AlphaFold monomer V2.0 prediction for hematopoietic prostaglandin D synthase (O35543) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O35543
Elsewhere: RCSB PDB 6N69 · PDBe 6N69 · UniProt O35543

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