MolNFT v2 · #157781 · protein

Crystal structure of NDM-1 with compound 7

6MDU: “Crystal structure of NDM-1 with compound 7”. X-ray diffraction at 1.15, 2 ligands (N1G, ZN). MolNFT v2 #157781 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6MDU
Type: protein
Length: 229 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.15
Source: Klebsiella pneumoniae
UniProt: C7C422
Ligands: N1G, ZN

Structure

x-ray diffraction · resolution 1.15 · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	229	—	C7C422

Ligands and binding sites

N1G · 1,5-diphenyl-N-(1H-tetrazol-5-yl)-1H-pyrazole-3-carboxamide · ligand · chains A
ZN · Zinc ion · metal · 2 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6MDU · Crystal structure of ndm-1 with compound 7 · the same entry in another collection · chain A against A, TM-score 1.00
C7C422 · AlphaFold monomer V2.0 prediction for metallo-beta-lactamase type 2 (C7C422) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C7C422
Elsewhere: RCSB PDB 6MDU · PDBe 6MDU · UniProt C7C422

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