MolNFT v2 · #157771 · protein
Mevalonate kinase from Methanosarcina mazei with 5-phosphomevalonate bound
6MDF: “Mevalonate kinase from Methanosarcina mazei with 5-phosphomevalonate bound”. X-ray diffraction at 2.46, 1 ligand (PMV). MolNFT v2 #157771 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6MDF
- Type
- protein
- Length
- 604 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.46
- Source
- Methanosarcina mazei
- UniProt
- Q8PW39
- Ligands
- PMV
Structure
x-ray diffraction · resolution 2.46 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 303 | — | Q8PW39 |
| B | — | protein | 301 | — | Q8PW39 |
Ligands and binding sites
- PMV · (3R)-3-hydroxy-3-methyl-5-(phosphonooxy)pentanoic acid · ligand · 2 copies · chains A, B
- GOL · Glycerol · additive · 13 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6MDF · Mevalonate kinase from methanosarcina mazei with 5-phosphomevalonate bound · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PW39
- Elsewhere: RCSB PDB 6MDF · PDBe 6MDF · UniProt Q8PW39
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