MolNFT v2 · #156914 · protein
Biphenyl-2,2',3-triol-soaked resting complex of Oxy and Fd in carbazole 1,9a-dioxygenase
6LLF: “Biphenyl-2,2',3-triol-soaked resting complex of Oxy and Fd in carbazole 1,9a-dioxygenase”. X-ray diffraction at 1.93, 3 ligands (FES, WBP, FE2). MolNFT v2 #156914 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6LLF
- Type
- protein
- Length
- 1,479 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.93
- Source
- Janthinobacterium sp. (strain J3); Pseudomonas resinovorans
- UniProt
- Q84II6, Q8GI16
- Ligands
- FES, WBP, FE2
Structure
x-ray diffraction · resolution 1.93 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 388 | — | Q84II6 |
| B | — | protein | 389 | — | Q84II6 |
| D, F | — | protein | 104 | — | Q8GI16 |
| E | — | protein | 106 | — | Q8GI16 |
Ligands and binding sites
- FES · Fe2/s2 (inorganic) cluster · ligand · 6 copies · chains A, B, C, D, E, F
- WBP · 3-(2-hydroxyphenyl)benzene-1,2-diol · ligand · 3 copies · chains A, B, C
- FE2 · Fe (II) ion · metal · 3 copies · chains A, B, C
- EDO · 1,2-ethanediol · additive · 17 copies · chains A, C, B, D, E, F
- GOL · Glycerol · additive · 4 copies · chains A, C, B, E
- PGE · Triethylene glycol · additive · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6LLF · Biphenyl-2,2',3-triol-soaked resting complex of oxy and fd in carbazole 1,9A-dioxygenase · the same entry in another collection · chain F against F, TM-score 1.00
- Q8GI16 · AlphaFold monomer V2.0 prediction for ferredoxin carac (Q8GI16) · a predicted model of the same protein · chain D against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q84II6
- Every structure of UniProt Q8GI16
- Elsewhere: RCSB PDB 6LLF · PDBe 6LLF · UniProt Q84II6 · UniProt Q8GI16
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