MolNFT v2 · #156818 · protein

BRD4-BD1 bound with compound 40

6LIM: “BRD4-BD1 bound with compound 40”. X-ray diffraction at 1.7591, 1 ligand (EE9). MolNFT v2 #156818 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6LIM
Type: protein
Length: 124 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.7591
Source: Homo sapiens
UniProt: O60885
Ligands: EE9

Structure

x-ray diffraction · resolution 1.7591 · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	124	—	O60885

Ligands and binding sites

EE9 · (3~{R})-6-[(4-isoquinolin-4-ylpyrimidin-2-yl)amino]-1, 3-dimethyl-4-propan-2-yl-3~{H}-quinoxalin-2-one · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6LIM · BRD4-BD1 bound with compound 40 · the same entry in another collection · chain A against A, TM-score 1.00
O60885 · AlphaFold monomer V2.0 prediction for bromodomain-containing protein 4 (O60885) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O60885
Elsewhere: RCSB PDB 6LIM · PDBe 6LIM · UniProt O60885

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