MolNFT v2 · #156792 · protein
The cryo-EM structure of coxsackievirus A16 mature virion in complex with Fab NA9D7
6LHQ: “The cryo-EM structure of coxsackievirus A16 mature virion in complex with Fab NA9D7”. Electron microscopy at 3.06, 1 ligand (SPH). MolNFT v2 #156792 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6LHQ
- Type
- protein
- Length
- 1,055 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.06
- Source
- Coxsackievirus A16; Mus musculus
- UniProt
- A0A2S1BJ89, A0A1D3TZV2, A0A2R4NBT3, A5HX42
- Ligands
- SPH
Structure
electron microscopy · resolution 3.06 · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 283 | — | A0A2S1BJ89 |
| B | — | protein | 245 | — | A0A1D3TZV2 |
| C | — | protein | 242 | — | A0A2R4NBT3 |
| D | — | protein | 57 | — | A5HX42 |
| L | — | protein | 108 | — | — |
| H | — | protein | 120 | — | — |
Ligands and binding sites
- SPH · Sphingosine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6LHQ · The cryo-EM structure of coxsackievirus A16 mature virion in complex with Fab NA9D7 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2S1BJ89
- Every structure of UniProt A0A1D3TZV2
- Every structure of UniProt A0A2R4NBT3
- Every structure of UniProt A5HX42
- Elsewhere: RCSB PDB 6LHQ · PDBe 6LHQ · UniProt A0A2S1BJ89 · UniProt A0A1D3TZV2 · UniProt A0A2R4NBT3 · UniProt A5HX42
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