MolNFT v2 · #156637 · protein
Structure of Bifidobacterium dentium beta-glucuronidase complexed with C6-hexyl uronic isofagomine
6LD0: “Structure of Bifidobacterium dentium beta-glucuronidase complexed with C6-hexyl uronic isofagomine”. X-ray diffraction at 1.901, 1 ligand (E8X). MolNFT v2 #156637 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6LD0
- Type
- protein
- Length
- 2,480 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.901
- Source
- Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1)
- UniProt
- D2Q7B1
- Ligands
- E8X
Structure
x-ray diffraction · resolution 1.901 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 620 | — | D2Q7B1 |
Ligands and binding sites
- E8X · (2~{S},3~{S},4~{R},5~{R})-2-hexyl-4,5-bis(oxidanyl) piperidine-3-carboxylic acid · ligand · 4 copies · chains A, D, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6LD0 · Structure of bifidobacterium dentium beta-glucuronidase complexed with C6-hexyl uronic… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D2Q7B1
- Elsewhere: RCSB PDB 6LD0 · PDBe 6LD0 · UniProt D2Q7B1
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