MolNFT v2 · #156628 · protein

Crystal structure of rice defensin OsAFP1

6LCQ: “Crystal structure of rice defensin OsAFP1”. X-ray diffraction at 1.62, 1 ligand (PO4). MolNFT v2 #156628 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6LCQ
Type: protein
Length: 108 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.62
Source: Oryza sativa
UniProt: Q6K209
Ligands: PO4

Structure

x-ray diffraction · resolution 1.62 · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	—	protein	54	—	Q6K209

Ligands and binding sites

PO4 · Phosphate ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6LCQ · Crystal structure of rice defensin OSAFP1 · the same entry in another collection · chain A against A, TM-score 1.00
Q6K209 · AlphaFold monomer V2.0 prediction for defensin-like protein CAL1 (Q6K209) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6K209
Elsewhere: RCSB PDB 6LCQ · PDBe 6LCQ · UniProt Q6K209

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