MolNFT v2 · #156585 · protein
shrimp ferritin-T158R
6LBC: “shrimp ferritin-T158R”. X-ray diffraction at 1.801, 1 ligand (FE), 5 pockets (best druggability 0.76). MolNFT v2 #156585 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6LBC
- Type
- protein
- Length
- 1,014 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.801
- Source
- Penaeus japonicus
- Molecule
- Ferritin
- EC
- 1.16.3.1
- UniProt
- T2B7E1
- Ligands
- FE
- Pockets
- 5 · best druggability 0.76
Structure
x-ray diffraction · resolution 1.801 · 1 distinct chain · 74% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Ferritin (EC 1.16.3.1) | protein | 169 | 74% helix, 1% strand | T2B7E1 |
Ligands and binding sites
- FE · Fe (III) ion · metal · 6 copies · chains A, B, C, D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.76 | 0.99 | 14 | empty |
| 2 | 289 | 0.59 | 0.79 | 35 | empty |
| 3 | 263 | 0.57 | 0.78 | 33 | empty |
| 4 | 106 | 0.37 | 0.74 | 18 | empty |
| 5 | 78 | 0.32 | 0.74 | 14 | empty |
Interfaces
9 interfaces between chains.
- A–B · 1465 Ų buried · 28 hydrogen bonds · protein-protein
- B–E · 732 Ų buried · 9 hydrogen bonds · protein-protein
- A–D · 729 Ų buried · 8 hydrogen bonds · protein-protein
- D–F · 728 Ų buried · 10 hydrogen bonds · protein-protein
- C–E · 728 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 6LBC · Shrimp ferritin-T158R · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt T2B7E1
- Elsewhere: RCSB PDB 6LBC · PDBe 6LBC · UniProt T2B7E1
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