MolNFT v2 · #15648 · protein

structure of microgravity-grown oxidized myoglobin mutant YQR (ISS8A)

1NAZ: “structure of microgravity-grown oxidized myoglobin mutant YQR (ISS8A)”. X-ray diffraction at 1.04, 3 ligands (HEM, SO4, OH), 1 pocket (best druggability 0.71). MolNFT v2 #15648 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 1NAZ
Type: protein
Length: 154 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.04
Source: Physeter catodon
Molecule: Myoglobin
UniProt: P02185
Ligands: HEM, SO4, OH
Pockets: 1 · best druggability 0.71

Structure

x-ray diffraction · resolution 1.04 · 1 distinct chain · 77% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Myoglobin	protein	154	77% helix, 0% strand	P02185

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
SO4 · Sulfate ion · ion · 3 copies · chains A
OH · Hydroxide ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	249	0.71	0.85	29	OH, HEM

Compared structures

1NAZ · Structure of microgravity-grown oxidized myoglobin mutant yqr (ISS8A) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02185
Elsewhere: RCSB PDB 1NAZ · PDBe 1NAZ · UniProt P02185

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