MolNFT v2 · #156254 · protein

Structure of RLD2 BRX domain bound to LZY3 CCL motif

6L0V: “Structure of RLD2 BRX domain bound to LZY3 CCL motif”. X-ray diffraction at 1.347. MolNFT v2 #156254 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6L0V
Type: protein
Length: 306 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.347
Source: Arabidopsis thaliana
UniProt: F4K0X5, Q5XVG3

Structure

x-ray diffraction · resolution 1.347 · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C	—	protein	61	—	F4K0X5
B, D, F, H	—	protein	16	—	Q5XVG3
E, G	—	protein	60	—	F4K0X5

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 4 copies · chains A, B, C, E
PEG · Di(hydroxyethyl)ether · additive · chains A
PGE · Triethylene glycol · additive · chains G, H

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6L0V · Structure of RLD2 brx domain bound to LZY3 ccl motif · the same entry in another collection · chain H against H, TM-score 1.00
Q5XVG3 · AlphaFold monomer V2.0 prediction for protein lazy 4 (Q5XVG3) · a predicted model of the same protein · chain B against A, TM-score 0.26

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt F4K0X5
Every structure of UniProt Q5XVG3
Elsewhere: RCSB PDB 6L0V · PDBe 6L0V · UniProt F4K0X5 · UniProt Q5XVG3

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