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MolNFT v2 · #156054 · protein

Ferredoxin I from C. reinhardtii, low X-ray dose

6KUM: “Ferredoxin I from C. reinhardtii, low X-ray dose”. X-ray diffraction at 1.4, 5 ligands (BEN, FES, NA). MolNFT v2 #156054 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6KUM
Type
protein
Length
189 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.4
Source
Chlamydomonas reinhardtii
UniProt
P07839
Ligands
BEN, FES, NA, CL, SCN

Structure

x-ray diffraction · resolution 1.4 · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein94—P07839
B—protein95—P07839

Ligands and binding sites

  • BEN · Benzamidine · ligand · 3 copies · chains A, B
  • FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains A, B
  • NA · Sodium ion · metal · chains B
  • CL · Chloride ion · ion · 2 copies · chains B
  • SCN · Thiocyanate ion · ion · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6KUM · Ferredoxin I from C. reinhardtii, low X-ray dose · the same entry in another collection · chain A against A, TM-score 1.00
  • P07839 · AlphaFold monomer V2.0 prediction for ferredoxin, chloroplastic (P07839) · a predicted model of the same protein · chain A against A, TM-score 0.99

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