MolNFT v2 · #155966 · protein
An X-ray structure of ferric F43Y/F46S sperm whale myoglobin in complex with guaiacol
6KRF: “An X-ray structure of ferric F43Y/F46S sperm whale myoglobin in complex with guaiacol”. X-ray diffraction at 1.86, 2 ligands (HEM, JZ3), 2 pockets (best druggability 0.71). MolNFT v2 #155966 on GenesisL1: 3D structure, binding sites…
- PDB
- 6KRF
- Type
- protein
- Length
- 153 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.86
- Source
- Physeter macrocephalus
- Molecule
- Myoglobin
- UniProt
- P02185
- Ligands
- HEM, JZ3
- Pockets
- 2 · best druggability 0.71
Structure
x-ray diffraction · resolution 1.86 · 1 distinct chain · 78% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Myoglobin | protein | 153 | 78% helix, 0% strand | P02185 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 204 | 0.71 | 0.87 | 26 | HEM |
| 2 | 68 | 0.43 | 0.81 | 13 | JZ3 |
Compared structures
- 6KRF · An X-ray structure of ferric F43Y/F46S sperm whale myoglobin in complex with guaiacol · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02185
- Elsewhere: RCSB PDB 6KRF · PDBe 6KRF · UniProt P02185
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