MolNFT v2 · #15595 · protein
Structure and dynamics of reduced Bacillus pasteurii cytochrome c: oxidation state dependent properties and implications for electron transfer processes
1N9C · Cytochrome c-553: “Structure and dynamics of reduced Bacillus pasteurii cytochrome c: oxidation state dependent properties and…”. Solution nmr at NOT, 1 ligand (HEC), 1 pocket (best druggability 0.60). MolNFT v2 #15595 on GenesisL1…
- PDB
- 1N9C
- Type
- protein
- Length
- 71 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- NOT
- Source
- Sporosarcina pasteurii
- Molecule
- Cytochrome c-553
- UniProt
- P82599
- Ligands
- HEC
- Pockets
- 1 · best druggability 0.60
Structure
solution nmr · resolution NOT · 1 distinct chain · 55% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome c-553 | protein | 71 | 55% helix, 3% strand | P82599 |
Ligands and binding sites
- HEC · Heme C · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 136 | 0.60 | 0.84 | 25 | HEC |
Modifications
Observed in the structure: 2 cofactor (heme c attachment).
Compared structures
- 1N9C · Structure and dynamics of reduced bacillus pasteurii cytochrome C: oxidation state… · the same entry in another collection · chain A against A, TM-score 1.00
- P82599 · AlphaFold monomer V2.0 prediction for cytochrome C-553 (P82599) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P82599
- Elsewhere: RCSB PDB 1N9C · PDBe 1N9C · UniProt P82599
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