MolNFT v2 · #155817 · protein
Crystal structure of SeMet-phytochromobilin synthase from tomato in complex with biliverdin
6KMD: “Crystal structure of SeMet-phytochromobilin synthase from tomato in complex with biliverdin”. X-ray diffraction at 2.2, 3 ligands (BLA, MG, CL). MolNFT v2 #155817 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6KMD
- Type
- protein
- Length
- 281 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.2
- Source
- Solanum lycopersicum
- UniProt
- Q588D6
- Ligands
- BLA, MG, CL
Structure
x-ray diffraction · resolution 2.2 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 281 | — | Q588D6 |
Ligands and binding sites
- BLA · Biliverdine IX alpha · ligand · chains A
- MG · Magnesium ion · metal · 2 copies · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6KMD · Crystal structure of semet-phytochromobilin synthase from tomato in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q588D6
- Elsewhere: RCSB PDB 6KMD · PDBe 6KMD · UniProt Q588D6
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