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MolNFT v2 · #155437 · protein

Crystal structure of FKRP in complex with Mg ion and CMP

6KAL: “Crystal structure of FKRP in complex with Mg ion and CMP”. X-ray diffraction at 2.6, 4 ligands (C5P, NAG, MG). MolNFT v2 #155437 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6KAL
Type
protein
Length
1,772 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.6
Source
Homo sapiens
UniProt
Q9H9S5
Ligands
C5P, NAG, MG, ZN

Structure

x-ray diffraction · resolution 2.6 · 4 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein443—Q9H9S5
B—protein445—Q9H9S5
C—protein441—Q9H9S5
D—protein443—Q9H9S5

Ligands and binding sites

  • C5P · Cytidine-5'-monophosphate · ligand · 4 copies · chains A, B, C, D
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 7 copies · chains A, B, C, D
  • MG · Magnesium ion · metal · 8 copies · chains A, B, C, D
  • ZN · Zinc ion · metal · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6KAL · Crystal structure of fkrp in complex with mg ion and cmp · the same entry in another collection · chain D against D, TM-score 1.00
  • Q9H9S5 · AlphaFold monomer V2.0 prediction for fukutin-related protein (Q9H9S5) · a predicted model of the same protein · chain D against A, TM-score 0.99

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