MolNFT v2 · #155325 · protein
Glycerol kinase form Thermococcus kodakarensis, complex structure with substrate.
6K79: “Glycerol kinase form Thermococcus kodakarensis, complex structure with substrate.”. X-ray diffraction at 2.19. MolNFT v2 #155325 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6K79
- Type
- protein
- Length
- 1,961 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.19
- Source
- Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
- UniProt
- O93623
Structure
x-ray diffraction · resolution 2.19 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 490 | — | O93623 |
| C, A | — | protein | 490 | — | O93623 |
| D | — | protein | 491 | — | O93623 |
Ligands and binding sites
- PGE · Triethylene glycol · additive · 4 copies · chains B, C, D, A
- GOL · Glycerol · additive · 4 copies · chains B, C, D, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6K79 · Glycerol kinase form thermococcus kodakarensis, complex structure with substrate. · the same entry in another collection · chain D against D, TM-score 1.00
- O93623 · AlphaFold monomer V2.0 prediction for glycerol kinase (O93623) · a predicted model of the same protein · chain C against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O93623
- Elsewhere: RCSB PDB 6K79 · PDBe 6K79 · UniProt O93623
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