MolNFT v2 · #155123 · protein

Crystal Structure of UDP-glucose 4-epimerase from Bifidobacterium longum in complex with NAD+ and UDP-GlcNAc

6K0H: “Crystal Structure of UDP-glucose 4-epimerase from Bifidobacterium longum in complex with NAD+ and UDP-GlcNAc”. X-ray diffraction at 2, 3 ligands (NAD, UD1, MG). MolNFT v2 #155123 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 6K0H
Type: protein
Length: 335 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2
Source: Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217…
UniProt: E8MF10
Ligands: NAD, UD1, MG

Structure

x-ray diffraction · resolution 2 · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	335	—	E8MF10

Ligands and binding sites

NAD · Nicotinamide-adenine-dinucleotide · ligand · chains A
UD1 · Uridine-diphosphate-N-acetylglucosamine · ligand · chains A
MG · Magnesium ion · metal · 2 copies · chains A
PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6K0H · Crystal structure of udp-glucose 4-epimerase from bifidobacterium longum in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
E8MF10 · AlphaFold monomer V2.0 prediction for udp-glucose 4-epimerase (E8MF10) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt E8MF10
Elsewhere: RCSB PDB 6K0H · PDBe 6K0H · UniProt E8MF10

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